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Data Downloads

TENOR Data

RNA-Seq transcripts

• Unannotated PARPNTE protein-coding transcripts that do not overlap with any RAP-DB transcripts.
  [GFF] [exonwise GTF] [FASTA (transcript)] [FASTA (CDS)] [FASTA (protein)]
• Unannotated PARPNTE non protein-coding transcripts that do not overlap with any RAP-DB transcripts.
  [GFF] [exonwise GTF] [FASTA (transcript)]
• Unannotated Cufflinks transcripts with strand information that do not overlap with any RAP-DB and PARPNTE transcripts.
  [GFF] [exonwise GTF] [FASTA (transcript)]

Other annotation

• cis-regulatory elements in the 1-kb promoter regions of all transcripts predicted by the PLACE database.
  [GFF]

Expression profile data

• Gene expression levels (RPK) for each transcript
  [normalized RPK]

Other Data

RAP-DB annotation in GTF format used in the expression analysis

• RAP-DB representative transcripts with mRNA evidences.
  [exonwise GTF]
• RAP-DB representative transcripts with inferred by ab initio prediction methods with EST evidence.
  [exonwise GTF]
• RAP-DB predicted transcripts without any transcriptional evidences.
  [exonwise GTF]
• *Original annotation data in GFF/FASTA format can be downloaded from RAP-DB.
  RAP-DB download page

Programs

Gene prediction program PARPNTE

• PARPNTE
  [JAR file] [Manual]